Culture-enriched metagenomic sequencing enables in-depth profiling of the cystic fibrosis lung microbiota

Authors: Fiona J. Whelan , Barbara Waddell , Saad A. Syed, Shahrokh Shekarriz, Harvey R. Rabin, Michael D. Parkins, and Michael G. Surette

Reference: Nature Microbiology, 2020

DOI: 10.1038/s41564-019-0643-y

PMID: 31959969

Completion of draft bacterial genomes by long-read sequencing of synthetic genomic pools

Authors: Hooman Derakhshani, Steve P. Bernier, Victoria A. Marko, and Michael G Surette

Reference: BMC Genomics, 2020

DOI: 10.1186/s12864-020-06910-6

Microbial dysbiosis and mortality during mechanical ventilation: a prospective observational study

Authors: Daphnée Lamarche, Jennie Johnstone, Nicole Zytaruk, France Clarke, Lori Hand, Dessi Loukov, Jake C. Szamosi, Laura Rossi, Louis P. Schenck, Chris P. Verschoor, Ellen McDonald, Maureen O. Meade, John C. Marshall, Dawn M. E. Bowdish, Tim Karachi, Diane Heels-Ansdell, Deborah J. Cook, Michael G. Surette, for the PROSPECT Investigators, Canadian Critical Care Trials Group & Canadian Critical Care Translational Biology Group

Reference: Respiratory Research, 2018

DOI: 10.1186/s12931-018-0950-5

PMID: 30526610

Assessment of Inter-Laboratory Variation in the Characterization and Analysis of the Mucosal Microbiota in Crohn’s Disease and Ulcerative Colitis

Authors: Jake C Szamosi, Jessica D Forbes, Julia Copeland, Natalie C Knox, Shahrokh Shekarriz, Laura Rossi,[…], Michael G Surette and Charles N Bernstein

Reference: Frontiers in Microbiology, 2020

DOI: 10.3389/fmicb.2020.02028

The sil locus in Streptococcus Anginosus Group: interspecies competition and a hotspot of genetic diversity

Authors: Michelle L. Mendonca, Jake C. Szamosi, Anne-Marie Lacroix, Michelle E. Fontes, Dawn M. Bowdish, and Michael G Surette

Reference: Frontiers in Microbiology, 2017

DOI: 10.3389/fmicb.2016.02156

PMID: 28119678

Capturing the diversity of the human gut microbiota through culture-enriched molecular profiling

Authors: Jennifer T. Lau, Fiona J. Whelan, Isiri Herath, Christine H. Lee, Stephen M. Collins, Premysl Bercik, and Michael G. Surette

Reference: Genome Medicine, 2016

DOI: 10.1186/s13073-016-0327-7

PMID: 27363992

Culture and Molecular-Based Profiles Show Shifts in Bacterial Communities of the Upper Respiratory Tract That Occur With Age

Authors: Jennifer C. Stearns, Carla J. Davidson, Suzanne McKeon, Fiona J. Whelan, Michelle E. Fontes, Anthony B. Schryvers, Dawn M.E. Bowdish, James Kellner, and Michael G Surette

Reference: ISMEJ, 2015

DOI: 10.1038/ismej.2014.250

PMID: 25575312

Antibiotic Susceptibility and Molecular Mechanisms of Macrolide Resistance in Streptococci Isolated From Adult Cystic Fibrosis Patients

Authors: Christina S. Thornton, Margot E. Grinwis, Christopher D. Sibley, Michael D. Parkins, Harvey R. Rabin, and Michael G. Surette

Reference: Journal of Medical Microbiology, 2015

DOI: 10.1099/jmm.0.000172

PMID: 26408040