Whelan FJ, Heirali AA, Rossi L, Rabin HR, Parkins MD, Surette MG. Longitudinal sampling of the lung microbiota in individuals with cystic fibrosisPLoS One. 2017 Mar 2;12(3):e0172811. doi: 10.1371/journal.pone.0172811.

Mendonca ML, Szamosi JC, Lacroix A-M, Fontes ME, Bowdish DM, and Surette MG. The sil locus in Streptococcus Anginosus Group: Interspecies competition and a hotspot of genetic diversity. Frontiers in Microbiology. 2017;7:2156. doi:10.3389/fmicb.2016.02156

Syed SA, Whelan FJ, Waddell B, Rabin HR, Parkins MD, Surette MG. Reemergence of Lower-Airway Microbiota in Lung Transplant Patients with Cystic Fibrosis. Ann Am Thorac Soc. 2016 Dec;13(12):2132-2142.

Schenck LP, Surette MG, Bowdish DM.  Composition and immunological significance of the upper respiratory tract microbiota. FEBS Lett. 2016 Nov;590(21):3705-3720. doi: 10.1002/1873-3468.12455. Epub 2016 Nov 1. Review.

Fei F*, Mendonca ML*, McCarry B, Bowdish DME, and Surette MG. Metabolic and transcriptomic profiling of Streptococcus intermedius during aerobic and anaerobic growth. Metabolomics. 2016;12(3):1-13. doi:10.1007/s11306-016-0966-0

Workentine M, Poonja A, Waddell B, et al. Development and Validation of a PCR Assay To Detect the Prairie Epidemic Strain of Pseudomonas aeruginosa from Patients with Cystic Fibrosis. Forbes BA, ed. Journal of Clinical Microbiology. 2016;54(2):489-491. doi:10.1128/JCM.02603-15

Thevaranjan N, Whelan FJ, Puchta A, et al. Streptococcus pneumoniae Colonization Disrupts the Microbial Community within the Upper Respiratory Tract of Aging Mice. Camilli A, ed. Infection and Immunity. 2016;84(4):906-916. doi:10.1128/IAI.01275-15

Lau JT, Whelan FJ, Herath I, et al. Capturing the diversity of the human gut microbiota through culture-enriched molecular profiling. Genome Medicine. 2016;8:72. doi:10.1186/s13073-016-0327-7

Simioni J, Hutton EK, Gunn E, et al. A comparison of intestinal microbiota in a population of low-risk infants exposed and not exposed to intrapartum antibiotics: The Baby & Microbiota of the Intestine cohort study protocol. BMC Pediatrics. 2016;16:183. doi:10.1186/s12887-016-0724-5

Branton WG, Lu JQ, Surette MG, et al. Brain microbiota disruption within inflammatory demyelinating lesions in multiple sclerosis. Scientific Reports. 2016;6:37344. doi:10.1038/srep37344

Heirali A, McKeon S, Purighalla S, et al. Assessment of the Microbial Constituents of the Home Environment of Individuals with Cystic Fibrosis (CF) and Their Association with Lower Airways Infections. Chotirmall SH, ed. PLoS ONE. 2016;11(2):e0148534. doi:10.1371/journal.pone.0148534

Cook DJ, Johnstone J, Marshall JC, et al. Probiotics: Prevention of Severe Pneumonia and Endotracheal Colonization Trial—PROSPECT: a pilot trial. Trials. 2016;17:377. doi:10.1186/s13063-016-1495-x

Whelan FJ, Surette MG. Early life nasal microbiota in infants with cystic fibrosis. Lancet Respir Med. 2016 Aug;4(8):595-6. doi: 10.1016/S2213-2600(16)30153-9. Epub 2016 Jun 21.

Bernier SP, Workentine ML, Li X, Magarvey NA, O’Toole GA and Surette MG (2016).Cyanide toxicity to Burkholderia cenocepacia is modulated by polymicrobial communities and environmental factors. Front. Microbiol. 7:725. doi: 10.3389/fmicb.2016.00725

Fiona J. Whelan & Michael G. Surette. (2015). Clinical Insights into Pulmonary Exacerbations in Cystic Fibrosis from the Microbiome: What are we Missing? Annals of the American Thoracic Society. doi: 10.1513/AnnalsATS.201506-353AW.

P. Moayyedi, Michael G. Surette, P.T. Kim, Josie Libertucci, M. Wolfe, C. Onischi, D. Armstrong, J.K. Marshall, Z. Kassam, W. Reinisch, C.H. Lee. (2015). Fecal Microbiota Transplantation Induces Remission in Patients with Active Ulcerative Colitis in a Randomized, Controlled Trial. Gastroenterology. pii: S0016-5085(15)00451-5. doi: 10.1053/j.gastro.2015.04.001

C.S. Thornton, M.E. Grinwis, C.D. Sibley, M.D. Parkins, H.R. Rabin, Michael G. Surette.(2015). Antibiotic Susceptibility and Molecular Mechanisms of Macrolide Resistance in Streptococci Isolated from Adult Cystic Fibrosis Patients. J Med Microbiol. 2015 Sep 25.  doi: 10.1099/jmm.0.000172.

Monica Faria, J.M. Conly, Michael G. Surette. (2015). The development and application of a molecular community profiling strategy to identify polymicrobial bacterial DNA in the whole blood of septic patients. BMC Microbiol. 16;15(1):215. doi: 10.1186/s12866-015-0557-7.

Wajiha Gohir*, Fiona J. Whelan*, Michael G. Surette, Caroline Moore, Jonathan D. Schertzer, & Deborah M Sloboda. (2015). Pregnancy-related changes in the maternal gut microbiota are dependent upon the mother’s periconceptional diet. Gut Microbes. doi:10.1080/19490976.2015.1086056 (*shared first-authorship)

Jennifer C. Stearns, C.J. Davidson, S. McKeon, Fiona J. Whelan, Michelle E. Fontes, A.B. Schryvers, Dawn M.E. Bowdish, J.D. Kellner, & Michael G. Surette. (2014). Culture and molecular-based profiles show shifts in bacterial communities of the upper respiratory tract that occur with age. The ISME Journal. doi:10.1038/ismej.2014.250

Fiona J. Whelan, Chris P. Verschoor, Jennifer C. Stearns, Laura Rossi, Kathy Luinstra, Mark Loeb, Marek Smieja, Jennie Johnstone, Michael G. Surette, & Dawn M.E. Bowdish. (2014). Loss of Topography in the Microbial Communities of the Upper Respiratory Tract in the Elderly. Annals of the American Thoracic Society. doi: 10.1513/AnnalsATS.201310-351OC

Matthew L. Workentine, Michael G. Surette, & Steve P. Bernier. (2014). Draft Genome Sequence of Burkholderia dolosa PC543 Isolated from Cystic Fibrosis Airways. ASM Genome Announcements.  doi:10.1128/genomeA.00043-14

Steve P. Bernier, Matthew L. Workentine, & Michael G. Surette. (2014). News & Views: Genetic signature of bacterial pathogen adaptation during chronic pulmonary infections. Nature Genetics News and Views. doi:10.1038/ng.2859

Fiona J. Whelan, Nicholas V.L. Yap, Michael G. Surette, G. Brian Golding, Dawn M. E. Bowdish. (2013). A guide to bioinformatics for immunologists. Frontiers in Immunology. doi: 10.3389/fimmu.2013.00416

Steve P. Bernier & Michael G. Surette. (2013). Concentration-dependent activity of antibiotics in natural environments. Frontiers in Microbiology. doi: 10.3389/fmicb.2013.00020

Matthew L. Workentine, Christopher D. Sibley, Bryan Glezerson, Swathi Purighalla, Jens C. Norgaard-Gron, Michael D. Parkins, Harvey R. Rabin, & Michael G. Surette. (2013).  Phenotypic Heterogeneity of Pseudomonas aeruginosa Populations in a Cystic Fibrosis Patient. PLOS ONE. 8(4): e60225. doi:10.1371/journal.pone.0060225